NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208199_1000073

Scaffold Ga0208199_1000073


Overview

Basic Information
Taxon OID3300027497 Open in IMG/M
Scaffold IDGa0208199_1000073 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)39849
Total Scaffold Genes38 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)28 (73.68%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.1318Long. (o)11.881Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F104586Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0208199_100007324F104586GGAMKVTLYNCVGSSGGPIQSTFCISSIHRYFTPGRNLALACFLLTHQLPGASHATPNSSPIRVASDFPGADVGEQINAAYADLPEQGGQITLTAGGSFSKPIVFGTNNKPVLLIGVPGDVVNLIYTGTIGTAITFDYGTGHRMGHGLRDVTLTGPGDATDTVGVRFGGSNGAEGITFRDFKIQSFGRNLEMGSHTWLAYFEHGLIRNGGVNVLLPAGLAQAGEQIVFNHVTFADAPPPHLNSVWIQGGGQEVIFRDCSFDQAQLRIGDGGQAAAQVVVSGSHFENSNYMLAGSVNYDYVTVDNHSGNLLRITDSYFLQDAPSNGPSRFLMVNGGTVFLCGVGMYTPAGSPMQHFATLAKTATIDAYGFSDLSGYITGSPFGY

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